Aitana Morton de Lachapelle
CIG-DGM joint seminar: "Genome-wide Association Studies"
Calcium Meta-Analysis
Can environment modify genetic effects on human anthropometric traits?
Can environmental factors modify the effect of genes influencing blood pressure?
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Control of mitosis in fission yeast
Course: "Cartographie, séquençage et structure des génomes 2008"
Course: "Solving Biological Problems that require Math"
Current dynamics of the Lausanne population genetics
Daniel Marbach
Dates & Deadlines
Dates & Deadlines 2009
Dates & Deadlines 2010
Dates & Deadlines 2011
Dates & Deadlines 2012
Dates & Deadlines 2013
Dates & Deadlines 2014
Discovery of phenotypes influenced by the season of birth
EISA and the biclust package
EISA module trees
EISA tutorial
EV format
EV ordering
EV tutorial
EddiMckinzie551
Estimating selection pressure on different genomic regions
Estimating speciation and extinction rates in a tropical plant
Evolution of Gene Expression Levels in Mammalian Organs
Evolution of polymorphism in plants
Evolution of seed size in relation to dispersal agent
Evolution: Estimating rate of speciation and extinction in a tropical plant
Expression studies
ExpressionView
ExpressionView Application Note
ExpressionView File Format
Feature Requests
File:05-10-09 Exercises solved.pdf
File:05-10-09 Exercises.pdf
File:26-10-09 Exercises solved.pdf
File:26-10-09 Exercises.pdf
File:ABCB1.pdf
File:Aitana basel2010.jpg
File:Aitana sib award 2010.JPG
File:Aitana sven sib award 2010.JPG
File:Aitana.png
File:Aitana.ppt
File:Aliya is seven.ZIP
File:Ap.jpg
File:ArbreOU.jpg
File:ArbreOUnodes.jpg
File:BM formule.pdf
File:BMI.pdf
File:BPgen.pdf
File:Barbara.JPG
File:Bastian.jpg
File:Bern 11.2009 - SystemsX.ch - Bergmann.ppt
File:BicoidStability.pdf
File:BioISA.pdf
File:CBG bugnon.jpg
File:CBG picture 2006.jpg
File:CBG picture 2007.jpg
File:CBG picture 2008.jpg
File:CBG picture 2010.jpg
File:CBG picture 2011.jpg
File:CGH.pdf
File:CHUV.png
File:CVPGX.pdf
File:CYP1A1-A2 BP.ppt
File:Capture.JPG
File:Carlo Rivolta Master09-class1.pdf
File:Carlo Rivolta Master09-class2.pdf
File:Cellophane.zip
File:CellophaneManual.pdf
File:Chapter 5 - Melanoma - Supplementary Files.zip
File:Codage des variables.pdf
File:Col shade.jpg
File:Colaus PCAmerge results.zip
File:Colchicine.pdf
File:Commandes R et explications.pdf
File:Comparative.pdf
File:Compte rendu.pdf
File:CoursBioMath10.ppt
File:Course ExpressionStudies 2009.ppt
File:DCA.pdf
File:DCX BMC.pdf
File:DCX CC.pdf
File:Daniel Marbach.png
File:Dated tree.zip
File:Debiopharm 6.2009.ppt
File:Di wiki cbg.jpg
File:Diana.jpeg
File:EMMA III VWI loci pix.pdf
File:EMMA III top hits list.pdf
File:Equation.JPG
File:Equations différentielles lactate.jpg
File:Example.jpg
File:Example2.jpg
File:Example3.jpg
File:Expmat.png
File:ExpressionView.tutorial.pdf
File:Expressionview.largebitmapdata.tar.gz
File:Expressionview.ordering.pdf
File:Expressionview.quickhelp.pdf
File:Expressionview.resizablepanel.tar.gz
File:Expressionview.screenshot.1.png
File:Expressionview.screenshot.2.png
File:Expressionview.screenshot.3.png
File:Expressionview.screenshot.4.png
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File:Expressionview.screenshot.7.png
File:Expressionview.screenshot.8.png
File:Expressionview.screenshot.9.png
File:Expressionview.screenshot.png
File:Expressionview.tutorial.pdf
File:Expressionview.xmldescription.pdf
File:FAXTAS.pdf
File:Fab DGM 091216.ppt
File:FarkasA3.3.pdf
File:FarkasChap3.pdf
File:Feasability vs innovation.png
File:Fig 1.png
File:Fig 2.png
File:Fig 3.png
File:Fig 4.png
File:Fig 5.png
File:Fig 6.png
File:Fig 7.png
File:Firmann.pdf
File:Fly patterning.png
File:Fly.pdf
File:Formulesou.jpg
File:Frogs bio10.zip
File:FunctionalGenomicsLecture2009.pdf
File:GMM CNV.zip
File:GWAS lecture Nov 2010 SB.ppt
File:GWAS lecture Nov 2011 SB.ppt
File:GWAS lecture SB.ppt
File:GWAS lecture.ppt
File:GWAS paper1.pdf
File:GWAS paper2.pdf
File:GWAS projects intro.ppt
File:GWAS season of birth.pdf
File:Genetics of food behaviour.ppt
File:Genetics of food behaviour2013.pdf
File:Genotypic data course March2012.ppt
File:Gig 1.png
File:Graph1.jpg
File:Graph2.jpg
File:Graph3.png
File:Graph4.png
File:Graph5.png
File:Graph6.png
File:Graph7.png
File:Génération d'arbres phylogénétiques.pdf
File:Height.pdf
File:Hersch2012iterative.pdf
File:How to solve biological problems with math 23032012 .pptx
File:HypoPhen movie1.avi
File:HypoPhen movie1.avi.zip
File:HypoPhen movie2.avi
File:HypoPhen screenshot1.jpg
File:HypoPhen win.zip
File:HypoPhen.dmg.zip
File:HypoPhenManual.pdf
File:HypoPhenSnapshot.jpg
File:HypoPhenTestImages.zip
File:Hypophen.tar.gz
File:ISA package v1.02.zip
File:ISA-module-example.png
File:ISA.pdf
File:ISApackage-1.03.zip
File:ISCB Chili 2012 A0.pdf
File:Icp.tar.gz
File:Integrative analysis.png
File:IntroDS.pdf
File:Introduction for wiki.pdf
File:Kapa2.jpg
File:Kapa2.png
File:Letter MP.pdf
File:Letter PV.pdf
File:Lin09.pdf
File:Lipogen2.pdf
File:Liver.pdf
File:Loc map.jpg
File:Locus Zoom.jpg
File:Locus Zoom.pdf
File:Logo UNIL.png
File:Lund v2.ppt
File:Lund v3.ppt
File:Mafigure.jpg
File:ManF2, 2lignes.jpeg
File:Manhattan plot.jpg
File:Manuscript aitana embryo supplement.pdf
File:Manuscript aitana embryo.pdf
File:McCarthy review GWAS.pdf
File:Micha.jpg
File:MichaOffice.png
File:Midterm talk.ppt
File:ModelingMorphogenGradients.pdf
File:Modèle de la rougeole sur 2 sites avec parametres optimisés et avec vaccin.pdf
File:Modèle de la rougeole sur 2 sites avec parametres optimisés et sans vaccin.pdf
File:Mol Syst Biol 2010 Lachapelle.pdf
File:Mousephylogeny.pdf
File:Murielle.ppt
File:Nadya photo.jpg
File:Nadya.jpg
File:Nestle Bergmann 10.9.2009.ppt
File:Neuro Barros0.pdf
File:Neuro Barros1.pdf
File:Neuro Intro0.jpg
File:Neuro Intro2.jpg
File:Neuro Intro3.jpg
File:Neuro gluc transp1.JPG
File:Neuro gluc transp2.jpg
File:Neuro intro1.jpg
File:Neuro notes articles.jpg
File:Neuro.png
File:Neuroenergetics final presentation.ppt
File:Neuroenergetics midterm presentation.ppt
File:New arrivals departures form.pdf
File:Ng.287.pdf
File:Ng.290.pdf
File:Nicholas.pdf
File:Notes lactate 1.jpg
File:Notes lactate 2.jpg
File:Notes on EMMA III loci VWI.pdf
File:Ou.jpg
File:Ou.script.pdf
File:PCA MERGE SOURCE SOM.zip
File:PPA.pdf
File:Paper MorphogenGradientFormation intro Wartlick.pdf
File:PgxJan13Micha.pdf
File:PgxMod1GWAS.zip
File:PhD thesis DMarek.pdf
File:Phases.png
File:PhotoSaschaCBG small.jpeg
File:PicCellophane1.jpg
File:Plantgrowthlogo.png
File:Plot.tif
File:Plot2.jpg
File:Plotk4.png
File:Plotk43.png
File:Polymorphism.zip
File:Popres.pdf
File:Poster ISCB FINAL 300dpi 30cmW.jpg
File:Powerpoint présentation 03.04.09.pdf
File:Pres cours 2010 v240210 OK.pdf
File:PresCours2013SaschaMitose.pdf
File:PresCoursSascha20011ModelDiffusion.pdf
File:Presentation finale.pdf
File:Presentation intermediaire labmouse.pptx
File:Presentation neuroenergetics.ppt
File:Presentation.pdf
File:Presentation.ppt
File:PresentationForStudents21 2 13.pdf
File:PresentationOptionMathe.ppt
File:Programme book.pdf
File:Projet 3 avril 2009 propre.ppt
File:Projet final.ppt
File:Projet spread of epidemics rougeole.ppt
File:Présentation Finale.ppt
File:Présentation Finale.pptx
File:Présentation du 29 mai 09.ppt
File:Présentation finale labmouse.ppt
File:Présentation intermédiaire labmouse.ppt
File:Présentation intermédiaire neuro2010.ppt
File:Présentation midterm.ppt
File:Présentationfinale.pdf
File:QuestColaus 1.pdf
File:Quicktest-0.95.zip
File:Quicktest-0.96.zip
File:RGE.pdf
File:Report BrownianMotion.pdf
File:Report Hoffman.pdf
File:Resume DMarek.pdf
File:Review.pdf
File:SA.pdf
File:SIB GL meeting Bern 4.2011.pptx
File:SIB.jpg
File:Sandhu08.pdf
File:Sav3 shade.jpg
File:Sav3 sun.jpg
File:Script R.pdf
File:Script général.pdf
File:Scriptgénéral.pdf
File:SeedSize Midterm A4.pdf
File:SeedsSizeSourceCode.zip
File:Seeman - 2010 - ANYAS - allostatic load review.pdf
File:SelectionPressure.pdf
File:Sib logo home.png
File:Sigma.jpg
File:Slides BrownianMotion.pptx
File:Slides Experimental Design 2010 SB.ppt
File:Slides SB.ppt
File:Slides SB1.pdf
File:Slides SB1.ppt
File:Slides SB2.pdf
File:Slides SB2.ppt
File:Slides SB3.pdf
File:Slides SB3.ppt
File:Slides SB4.pdf
File:Slides SB4.ppt
File:Standard GWAS for molecular phenotypes.png
File:Standard GWAS for multiple phenotypes.png
File:Standard GWAS for one phenotype.png
File:Statistics of cell size determination in fission yeast-pom1 and cdr2 CMRM.pdf
File:Sven cat pic.jpg
File:Sven pic.jpg
File:Sven pic2.jpg
File:SystemsXlogo.png
File:Tabac alcool.pdf
File:TimCBG.jpg
File:TotVar.zip
File:TreeOfLife-final.pdf
File:TreeOfLife-midterm.pdf
File:TreeOfLife.pdf
File:U.jpg
File:UNIL tenure comission 1.2010 Sven Bergmann.ppt
File:UNIL.png
File:UricAcid.pdf
File:V.jpg
File:Valsesia - PhD thesis - January 2011.zip
File:Valsesia - Yearly reports.zip
File:Valsesia Armand PhD Thesis 2011bw.pdf
File:Velders - 2011 - Psychoneuroendo - cortisol genes depression.pdf
File:Vlab Reaction Diffusion mac.zip
File:Vlab Reaction Diffusion.zip
File:W.jpg
File:Websites.pdf
File:Wiki Maths fini.pdf
File:Wiki-GéometriePom1.pdf
File:Wiki.David,Maia,Anouk.pdf
File:Wing.png
File:WingX.jpg
File:Yeast.gif
File:Zoltan pic.jpg
File:Zurich 21.10.2010 WingX review - Bergmann.ppt
File:Zurich IMSB 4.2010 - Bergmann.ppt
Final report meeting
Final report meeting 2010
Final report meeting 2012
Final report meeting 2013
GIANT height
GMM
GWAS project
Genetic determinants of eating patterns
Genetics of allostatic load in the CoLaus study
Genetics of eating patterns
Genetics of urinary calcium levels
Genome Wide Association Studies
Genome-wide association studies on various clinical phenotypes
Genomic studies: databases and tools
Genomic studies: exercises
Genomic studies: theory
Getting started with ExpressionView
Golden rules for a good presentation
Group Meeting
Guidelines for a successful stay at the CBG
Hardware
Help:Contents
Help:Editing
History
How to upload files and edit your project page
Hypergenes Study
HypoPhen
I:CBGWiki:About
I:WikiIssues
ICP software
ISA
ISA internals
ISA tutorial
Inference of Overall Heritability Captured by GWA-Data
Integrative Analysis
Intermediate report meeting
Intermediate report meeting 2010
Intermediate report meeting 2011
Intermediate report meeting 2012
Internal
Introduction to dynamical systems and differential equations
Jacques Beckmann
Johann Weber
Journal Club
Journal Club (autumn 2013)
Journal Club (spring 2012)
Journal Club (spring 2013)
Kinematics of seedling elongation
Lab mouse phylogeny
Library
Literature seminar: "Systematic interpretation of genetic interactions using protein networks"
Literature seminars for first-year PhD UNIL students (3/11/08, 12:15-14:00, Room 219 at Bugnon 27) on "Systematic interpretation of genetic interactions using protein networks"
Long Range Dpp Gradient Formation
Main Page
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Metabolomics
Metabomatching
Microarray data analysis of the shade avoidance in plants
Mitose cellulaire dans les levures: étude des effets géométriques sur la formation du gradient de Pom1
Modeling morphogen gradient formation
Modeling of gradient formation in "Drosophila" embryos
Modeling: Pattern formation using Reaction-Diffusion models
Modeling: Spread of epidemics
Morphogenèse: modélisation de la formation de gradients de diffusion
Murielle Bochud
NOFIA
Narcolepsy
Neuroenergetics: Importance of transport for the regulation of energy substrate fluxes in brain cells
Neuroenergetics: Modeling of brain cell metabolic phenotypes
Nicolas/Anna: TBA
Ordering algorithm used in ExpressionView
Other BioC packages
Packaging matlab to standalone
Pathway Analyisis of GWAS data
Pathway enrichment in DNAse1 footprinting data
People
Phototropism in Arabidopsis
Pictures
Positions
Publications
QuickTest
Robust inference of gene regulatory networks using bootstrapping
Robustness in Drosophila embryo patterning
Running ISA in parallel
SIB Young Bioinformatician award 2010
SIB course: "Statistical analysis applied to genome and proteome analyses"
SPSW 2012 summer school exercise session
Sandbox
Sandbox2
Science
Software
Speciation and extinction rate estimation using phylogenetic trees
Statistics of cell size determination in fission yeast
Statistics of cell size determination in fission yeast - pom1 and cdr2
Statistics of cell size determination in fission yeast - the pom1 gradient
Summer school course: "Biologie und Medizin im digitalen Zeitalter: Jenseits der Disziplinen"
Sven Bergmann
Talk:I:Test
Teaching
TestMaiaKaplan
The Library
Tissue specific expression with the Iterative Signature Algorithm
Total Explained Variance
Tree of Life: Inferring species phylogenies based on entire proteomes
UHTS
UNIL BSc course: "Experimental design 2009"
UNIL BSc course: "Experimental design 2010"
UNIL BSc course: "Experimental design"
UNIL BSc course: "GGE course module on Genome-wide association studies"
UNIL BSc course: "Solving Biological Problems that require Math 2009"
UNIL BSc course: "Solving Biological Problems that require Math 2010"
UNIL BSc course: "Solving Biological Problems that require Math 2011"
UNIL BSc course: "Solving Biological Problems that require Math 2012"
UNIL BSc course: "Solving Biological Problems that require Math 2013"
UNIL BSc course: "Solving Biological Problems that require Math 2014"
UNIL BSc course: "Solving Biological Problems that require Math"
UNIL Bachelor course: "Solving Biological Problems that require Math"
UNIL Biomedical Master: "Metabolic diseases 2010"
UNIL Biomedical Master: "Metabolic diseases 2011"
UNIL Biomedical Master: "Metabolic diseases"
UNIL MSc course: "Cartographie, séquençage et structure des génomes 2007"
UNIL MSc course: "Cartographie, séquençage et structure des génomes 2008"
UNIL MSc course: "Genes: from sequence to function 2009"
UNIL Masters course: "Cartographie, séquençage et structure des génomes 2008"
UNIL PhD Literature seminar: "Systematic interpretation of genetic interactions using protein networks"
UNIL PhD literature seminar: "Diffusion and scaling during early embryonic pattern formation"
UNIL PhD literature seminar: "Genome-wide association study of 14,000 cases of seven common diseases and 3,000 shared controls"
UNIL PhD literature seminar: "Optimality and evolutionary tuning of the expression level of a protein"
UNIL PhD literature seminar: "Systematic interpretation of genetic interactions using protein networks"
UNIX recipes
Uncovering modes of evolution: testing for selection versus genetic drift in species diversification
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Whole genome association study: Alcohol consumption in the Cohorte Lausannoise
Whole genome association study: Tobacco consumption in the Cohorte Lausannoise
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WingX: Systems Biology of the Drosophila Wing
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